dmriprep¶

Preprocessing of neuroimaging dwi data¶

Free software: BSD license
Documentation: https://dmriprep-personal.readthedocs.io.

Preparing your data¶

You should have raw data organized in the BIDS format. Also, you should have run Freesurfer and the results should be in a derivatives/ folder:

bids
├── derivatives
│   └── freesurfer
│       └── sub-01
└── sub-01
  ├── dwi
  │   ├── sub-01_ses-01_dwi.bval
  │   ├── sub-01_ses-01_dwi.bvec
  │   ├── sub-01_ses-01_dwi.json
  │   └── sub-01_ses-01_dwi.nii.gz
  └── fmap
      ├── sub-01_ses-01_acq-dwi_dir-AP_epi.json
      ├── sub-01_ses-01_acq-dwi_dir-AP_epi.nii.gz
      ├── sub-01_ses-01_acq-dwi_dir-PA_epi.json
      └── sub-01_ses-01_acq-dwi_dir-PA_epi.nii.gz

Features¶

TODO

Credits¶

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template. Several pieces of code have been taken from fmriprep, niworkflows and sdcflows.

License information¶

We use the 3-clause BSD license; the full license may be found in the LICENSE file in the dmriprep distribution.

All trademarks referenced herein are property of their respective holders.