What’s new

Upcoming release (TBD)

0.2.0 (September 6, 2019)

  • ENH: Add workflows for ANTs and BrainSuite nonlinear registration-based distortion correction

  • ENH: Add workflow for concatenating dwi scans based on --concat_dwis list

  • ENH: Enable parallel processing of nodes

  • ENH: Run bids-validator before pipeline start

  • ENH: Switch crash logs from pickled objects to text files for easier reading by the user

  • MAINT: Migrate to a setup.cfg style of installation

  • ENH: If b0s in the same phase encoding direction don’t exist, allow topup to use them from the dwi image

  • ENH: Switch post-eddy mask creation node to use dwi2mask instead of median_otsu

  • ENH: Take in a pre-specified acquisition parameters file for eddy instead of creating anew using --acqp_file

  • ENH: Update command line interface with stricter validation of input arguments and options

  • ENH: Add workflow for using a synthetic b0 as a reverse PE image for topup (must be pre-generated)

  • ENH: Add workflows for susceptibility distortion correction using fieldmap, phasediff and phase1/phase2 scans

  • ENH: Add command line options for ignoring denoising and unringing and setting desired output resolution

  • ENH: Add dwidenoise, mrdegibbs, mrresize, and dwibiascorrect from Mrtrix3 as preprocessing steps for the dwi images

  • ENH: Refactor run_dmriprep_pe workflow into a single subject workflow with separate sub-workflows for dwi pre-processing and topup

0.1.0 (September 6, 2018)

  • First release on GitHub.